Text Analytics and BIoInformatics Lab

Recent Publications

The effect of morphology in named entity recognition with sequence tagging
by Onur Güngör, Tunga Güngör, Suzan Üsküdarlı
in Natural Language Engineering, doi: 10.1017/S1351324918000281, 2018
Ontology-based literature mining of E. coli vaccine-associated gene interaction networks
by Junguk Hur, Arzucan Özgür, Yongqun He
in Journal of Biomedical Semantics, 8:12, doi: 10.1186/s13326-017-0122-4, 2017
Description of the BOUN System for the Trilingual Entity Detection and Linking Tasks at TAC KBP 2017
by Arda Çelebi and Arzucan Özgür
in Text Analysis Conference (TAC), 2017
Segmenting Hashtags and Analyzing Their Grammatical Structure
by Arda Çelebi and Arzucan Özgür
in Journal of Association For Information Science and Technology (JASIST), doi:10.1002/asi.23989, 2017
Discovery and Genotyping of Novel Sequence Insertions in Many Sequenced Individuals
by Kavak, P., Lin, Y.Y., Numanagic, I., Asghari, H., Güngör, T., Alkan, C. and Hach, F.
in Bioinformatics, Vol.33, 2017, p.i161-i169.
BIOSSES: a semantic sentence similarity estimation system for the biomedical domain
by Gizem Sogancioglu, Hakime Ozturk, and Arzucan Ozgur
in Bioinformatics, 33 (14): i49-i58, 2017.
Automatic query generation using word embeddings for retrieving passages describing experimental methods
by Ferhat Aydın, Zehra Melce Hüsünbeyi, and Arzucan Ozgur
in Database, 2017: baw166, doi: 10.1093/database/baw166, 2017.

Recent Theses

A Framework For Understanding And Detecting Harassment In Social VR
by Lance Powell in 2018 under the supervision of Arzucan Özgür and Didar Akar
Natural Language Processing For Mining Neuroanatomical Relations Among Brain Regions
by Erinç Gökdeniz in 2016 under the supervision of Arzucan Özgür and Reşit Canbeyli
Analyzing Stemming and Sentence Simplification Methodologies for Turkish Multi-document Text Summarization
by Muhammed Yavuz Nuzumlalı in 2015 under the supervision of Arzucan Özgür
Question Analysis and Information Retrieval for a Turkish Question Answering System: HazırCevap
by Caner Derici in 2014 under the supervision of Tunga Güngör
Analyzing Drug Targets using Ligand Similarity
by Hakime Öztürk in 2014 under the supervision of Arzucan Özgür and Ethem Alpaydın