Text Analytics and BIoInformatics Lab
TABI

Recent Publications

Automated Neuroanatomical Relation Extraction: A Linguistically Motivated Approach with a PVT Connectivity Graph Case Study
by Erinç Gokdeniz, Arzucan Özgür, Reşit Canbeyli
in Frontiers in Neuroinformatics, 10:39. doi: 10.3389/fninf.2016.00039, 2016.
Ontology-based Categorization of Bacteria and Habitat Entities using Information Retrieval Techniques
by Mert Tiftikci , Hakan Şahin , Berfu Büyüköz , Alper Yayıkçı , Arzucan Özgür
in Proceedings of the 4th BioNLP Shared Task Workshop, pages 56–63, Berlin, Germany, August 13, 2016. Association for Computational Linguistics.
Towards Building a Political Protest Database to Explain Changes in the Welfare State
by Çağıl Sonmez , Arzucan Özgür, Erdem Yörük
in Proceedings of the 10th SIGHUM Workshop on Language Technology for Cultural Heritage, Social Sciences, and Humanities (LaTeCH), pages 106–110, Berlin, Germany, August 11, 2016. Association for Computational Linguistics
A comparative study of SMILES-based compound similarity functions for drug-target interaction prediction
by Hakime Ozturk, Elif Ozkirimli, Arzucan Ozgur
in BMC Bioinformatics, 17:128, 2016.
Robustness of Massively Parallel Sequencing Platforms
by Kavak, P., Yüksel, B., Aksu, S., Külekçi, O., Güngör, T., Hach, F., Şahinalp, S.C., Alkan, C. and Sağıroğlu, M.Ş.
in PLoS ONE, 2016.
A comparative study of SMILES-based compound similarity functions for drug-target interaction prediction
by Hakime Ozturk, Elif Ozkirimli, Arzucan Ozgur
in BMC Bioinformatics, 17:128, 2016.

Recent Theses

Natural Language Processing For Mining Neuroanatomical Relations Among Brain Regions
by Erinç Gökdeniz in 2016 under the supervision of Arzucan Özgür and Reşit Canbeyli
Analyzing Stemming and Sentence Simplification Methodologies for Turkish Multi-document Text Summarization
by Muhammed Yavuz Nuzumlalı in 2015 under the supervision of Arzucan Özgür
Question Analysis and Information Retrieval for a Turkish Question Answering System: HazırCevap
by Caner Derici in 2014 under the supervision of Tunga Güngör
Analyzing Drug Targets using Ligand Similarity
by Hakime Öztürk in 2014 under the supervision of Arzucan Özgür and Ethem Alpaydın